Note: Due to extensive enhancements in Micro-Manager, we use the Multi-Dimensional Acquisition functionality built-in to Micro-Manager now instead pif this older script. MM_Images_to_Hyperstack ĭescription: This Beanshell script runs in Micro-Manager, and replicates the basic functionality of our old 4d acquisition plugin running under ImageJ. Caution: this plugin requires opening the dataset in RAM, due to a limitation in ImageJ's "Stack to Hyperstack…" command. (4) Hyperstack Projector plugin (experimental)ĭescription: This plugin automates the creation of a Hyperstack from the Metadata.txt file of a Micro-Manager dataset. Please recognize that I am a professor, and program in my "spare" time, so support for these plugins is limited and bound to be sporadic!Ĭlick on the links below to go to various sections of this page. The advantage of this software suite is that it is free(!), and that it allows 4d datasets to be viewed without special, proprietary software. I (Jeff) have developed plugins that run within the public domain program, ImageJ, to acquire, process, and play back 4d microscopy data as an outgrowth of our own imaging needs.
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